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+=== JSmol2WP ===
+Contributors: Jim Hu
+Tags: shortcodes, JSmol, Jmol, molecular graphics, PDB
+Requires at least: 3.0
+Tested up to: 4.9.4
+Donate link:http://biochemistry.tamu.edu/index.php/alum/giving/
+Stable tag: 1.07
+License: GPLv2 or later
+License URI: http://www.gnu.org/licenses/gpl-2.0.html
+Text domain:jsmol2wp
+Domain path:/languages/
+
+Plugin to place JSmol molecular graphics applets in Wordpress posts or pages.
+
+== Description ==
+This shortcode plugin places JSmol applets in WordPress posts and pages.
+
+Use [jsmol pdb='accession'] for a minimal version. jsmol2wp will look to see if a pdb file has been uploaded to your wordpress and it will use that file if it can find it. If it can't find a matching post for an uploaded attachement, it will try <a href='http://rcsb.org/pdb'>http://rcsb.org/pdb</a>. If it can't find a match there either, you'll get an error message in the JSmol window. Additional information on optional parameters are at the About/Help link in the applets.
+
+This plugin was developed for use on the website for the Department of Biochemistry and Biophysics
+at Texas A&M University (http://biochemistry.tamu.edu).
+
+== Installation ==
+Place in the plugins directory and activate. No additional files or configurations are needed.
+
+Thanks to Bob Hanson and the JMol team for making the javascript code for jsmol available. See: 
+
+http://chemapps.stolaf.edu/jmol/jsmol
+http://wiki.jmol.org/index.php/Jmol_JavaScript_Object
+
+This plugin also benefited from using Jaime Prilusky's mediawiki extension for inspiration
+http://proteopedia.org/support/JSmolExtension/
+== Upgrade Notice ==
+Version 1.03 updates the Jmol libraries and fixes a bug with the load parameter
+== Frequently Asked Questions ==
+= Is there an example of an installation? =
+See http://jimhu.org/jsmol2wp-plugin-released-at-wordpress-org/
+= Where can I learn more about what JSmol can do? =
+Jmol documentation can be found at http://jmol.sourceforge.net/#Learn%20to%20use%20Jmol and http://jmol.sourceforge.net/docs/JmolUserGuide/
+== Screenshots ==
+1. Applet for a protein. 
+2. Applet for a small molecule.
+
+== Changelog ==
+= 1.07 =
+fix extremely stupid svn error where needed files from the j2s directory were not in the repo
+= 1.06 =
+change rcsb file path to avoid redirect
+= 1.05 =
+load rcsb pdb files via https instead of http
+= 1.04 =
+* updated jsmol package from Jmol sourceforge
+* first attempt at internationalization
+** Added idioma directory from jsMol distributions
+** Added set language directive based on wordpress get_locale()
+= 1.03 =
+* updated jsmol package from Jmol sourceforge
+* Remove beta from help.htm
+* fix bug where load param was not working
+= 1.02 =
+* fixes to this readme.txt file to improve the display at the wordpress.org plugin repository
+= 1.01 =
+* tweaks for wordpress.org deposition
+= 1.0 =
+* update JSmol code to 14.3.12_2015.01.28
+* prepare for release to wordpress.org plugin repository
+= 0.94 beta =
+* add isosurface support
+* rewrite the code to set up structure loading
+* replace WP get_page_by_title with a function that matches the filename
+* add jvxl to file types
+* fixed bug where caption nonmatching required casting match as a string.
+* move the help demo page to a more stable URL.
+= 0.93 beta =
+* set default type based on fileurl extension if present
+* fix bug where reset button failed with data from fileurl
+= 0.92 beta =
+* change appletID to not require $acc.
+= 0.9 beta =
+* improve help page
+* improve uniqueness identifiers for multiple Jmolapplets on the same post/page; add the option to hand code instances
+* improve debug messages (or at least change them)
+* make reset button standard and have it remember the load commands
+* standard buttons depend on the type of molecule loaded.
+* add some semicolons to the template to try to fix lint warnings: http://www.javascriptlint.com/online_lint.php
+= 0.8 beta =
+* removed data directory
+* changed system for counting instances of the shorttag so we don't need preg_match
+* removed whitespace from template hoping that solves the problem of themes adding markup
+* simplified load script as suggested by Bob Hansen
+* made applet IDs more unique by appending post id
+= 0.7 beta =
+* update jsmol libraries to 4.1.7_2014.06.09
+* add dependencies for jquery-ui-core and jquery-ui-menu fixes popup problem in some themes
+* refactor to support additional file types (in progress)
+* fix multiline regex bug
+* fix bug that caused failure to load when permalinks used ?p=post_number format
+* debug constructor
+*  debug view
+..* add path to uploaded file
+..* add test for get_page_by_title
+= 0.6 alpha =
+* register script before enqueueing it.
+* added ability to add Jmol.script commands
+* added the ability to add jmolCommandInput
+= 0.5 alpha = 
+* added wrap and debug options
+= 0.4 alpha =
+* changed to nojq.
+* modified command processing to not split on allowed characters in Jmol syntax.
+= 0.3 alpha =
+* changed default to spin off in order to save client cpu
+* custom command buttons working.
+= 0.2 alpha =
+* changed system to use a template based on the distro file simple1.htm. 
+* added captioning
+* works with local or remote pdb files from rcsb.org/pdb
+= 0.1 pre-alpha =
+* basic shortcode working with uploaded pdb file
+* adds .pdb chemical/pdb mime type to allowed mime types
+* handles multiple shortcodes on the same page