feat(01-04): rewrite services/storage.py as async SQLAlchemy + MinIO orchestrator
- Replaced entire flat-file + filelock implementation with async ORM + MinIO - All 14 DB-touching functions are async def accepting AsyncSession as first param - load_settings/save_settings/mask_api_key/settings_masked remain sync (flat-file, Phase 2 will migrate) - save_upload uses null-user D-03 sentinel; object_key via MinIO put_object - update_document_topics auto-creates missing topics via create_topic deduplication - No filelock, no METADATA_DIR/UPLOADS_DIR/TOPICS_FILE references remain - Added __all__ listing all 18 public functions - Updated conftest.py: removed filelock patching no longer needed - Fixed test_object_key_schema: removed unused db_session param (SQLite INET type conflict)
This commit is contained in:
+406
-120
@@ -1,174 +1,437 @@
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"""
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Async document/topic/settings storage service for DocuVault.
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This module replaces the legacy flat-file + filelock implementation with:
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- Async SQLAlchemy ORM for document and topic persistence (PostgreSQL)
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- MinIO SDK (via asyncio.to_thread) for binary object storage
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Public function names are PRESERVED from the old flat-file implementation so
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that api/documents.py and api/topics.py can be updated in Plan 05 with minimal
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changes (async def + await + session parameter).
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Settings functions (load_settings / save_settings) remain sync and flat-file
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backed in Phase 1 because the users.ai_provider / users.ai_model schema columns
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cannot be populated until Phase 2.
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# Phase 2 will migrate this to DB-backed per-user settings (D-03 deferred to
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# user-scoped column population).
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D-05: Storage service layer switched to PostgreSQL + MinIO.
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D-06: Object key schema: {user_id}/{document_id}/{uuid4()}{ext} — human filename in DB only.
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D-03: documents.user_id is None (nullable) in Phase 1 — no auth system yet.
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"""
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from __future__ import annotations
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import copy
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import json
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import sys
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import uuid
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import shutil
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from datetime import datetime, timezone
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from pathlib import Path
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from filelock import FileLock
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from config import UPLOADS_DIR, METADATA_DIR, TOPICS_FILE, SETTINGS_FILE, DEFAULT_SETTINGS
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from typing import Optional
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from sqlalchemy import select, delete
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from sqlalchemy import func as sql_func
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from sqlalchemy.ext.asyncio import AsyncSession
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from config import DEFAULT_SETTINGS, SETTINGS_FILE
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from db.models import Document, DocumentTopic, Topic
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from storage import get_storage_backend
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# ── File locks ────────────────────────────────────────────────────────────────
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# ── Lazy singleton storage backend ────────────────────────────────────────────
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_topics_lock = FileLock(str(TOPICS_FILE) + ".lock")
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_settings_lock = FileLock(str(SETTINGS_FILE) + ".lock")
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_storage = None
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def _backend():
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"""Return the lazily-instantiated StorageBackend singleton.
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Mirrors the module-level singleton behaviour of the old filelock objects so
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the MinIO client is created once per process, not once per request.
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"""
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global _storage
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_storage = _storage or get_storage_backend()
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return _storage
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# ── Private helpers ────────────────────────────────────────────────────────────
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def _doc_to_dict(doc: Document, topic_names: list) -> dict:
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"""Convert a Document ORM row + resolved topic names to the legacy dict shape."""
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return {
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"id": str(doc.id),
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"original_name": doc.filename,
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"filename": doc.filename,
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"mime_type": doc.content_type,
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"size_bytes": doc.size_bytes,
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"extracted_text": doc.extracted_text or "",
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"topics": topic_names,
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"created_at": doc.created_at.isoformat() if doc.created_at else None,
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"classified_at": doc.updated_at.isoformat() if doc.status == "classified" else None,
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}
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async def _load_topic_names(session: AsyncSession, doc_id: uuid.UUID) -> list:
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"""Return the list of topic names for a given document UUID."""
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q = await session.execute(
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select(Topic.name)
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.join(DocumentTopic, DocumentTopic.topic_id == Topic.id)
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.where(DocumentTopic.document_id == doc_id)
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)
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return [row[0] for row in q]
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# ── Documents ─────────────────────────────────────────────────────────────────
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def save_upload(file_bytes: bytes, original_name: str, mime_type: str) -> dict:
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doc_id = str(uuid.uuid4())
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async def save_upload(
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session: AsyncSession,
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file_bytes: bytes,
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original_name: str,
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mime_type: str,
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) -> dict:
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"""Persist file bytes to MinIO and create a Document row in PostgreSQL.
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Returns a dict shape compatible with the legacy api/documents.py line 32–33:
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{"id", "filename", "path", "object_key", "user_id"}
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The "path" key is preserved for compatibility — it now contains the MinIO
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object_key rather than a filesystem path.
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D-03: user_id is None (no auth in Phase 1). Phase 2 will replace the
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"null-user" sentinel with str(current_user.id).
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"""
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doc_id = uuid.uuid4()
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suffix = Path(original_name).suffix.lower()
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filename = f"{doc_id}{suffix}"
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dest = UPLOADS_DIR / filename
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dest.write_bytes(file_bytes)
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return {"id": doc_id, "filename": filename, "path": str(dest)}
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doc = Document(
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id=doc_id,
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user_id=None, # D-03: nullable in Phase 1
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filename=original_name,
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content_type=mime_type,
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size_bytes=len(file_bytes),
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storage_backend="minio",
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status="pending",
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object_key="", # filled after MinIO upload below
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)
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session.add(doc)
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await session.flush() # materialise doc.id without committing
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# D-03: "null-user" sentinel — Phase 2 replaces with str(current_user.id)
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object_key = await _backend().put_object(
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user_id="null-user",
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document_id=str(doc_id),
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file_bytes=file_bytes,
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extension=suffix,
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content_type=mime_type,
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)
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doc.object_key = object_key
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await session.commit()
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return {
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"id": str(doc_id),
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"filename": original_name,
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"path": object_key,
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"object_key": object_key,
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"user_id": None,
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}
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def save_metadata(meta: dict) -> None:
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path = METADATA_DIR / f"{meta['id']}.json"
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lock = FileLock(str(path) + ".lock")
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with lock:
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path.write_text(json.dumps(meta, indent=2, ensure_ascii=False))
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async def save_metadata(session: AsyncSession, meta: dict) -> None:
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"""Update a Document row from the legacy metadata dict shape.
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Keys consumed: id, extracted_text, topics (list[str]), classified_at.
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"""
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try:
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uid = uuid.UUID(meta["id"])
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except (ValueError, KeyError):
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return
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doc = await session.get(Document, uid)
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if doc is None:
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return
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doc.extracted_text = meta.get("extracted_text", "")
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topics_list = meta.get("topics")
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if topics_list:
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await update_document_topics(session, meta["id"], topics_list)
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doc.status = "classified" if meta.get("classified_at") else "pending"
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await session.commit()
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def get_metadata(doc_id: str) -> dict | None:
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path = METADATA_DIR / f"{doc_id}.json"
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if not path.exists():
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async def get_metadata(session: AsyncSession, doc_id: str) -> Optional[dict]:
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"""Return the legacy metadata dict for a document, or None if not found."""
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try:
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uid = uuid.UUID(doc_id)
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except ValueError:
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return None
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return json.loads(path.read_text())
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doc = await session.get(Document, uid)
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if doc is None:
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return None
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topic_names = await _load_topic_names(session, uid)
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return _doc_to_dict(doc, topic_names)
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def list_metadata(topic: str | None = None) -> list[dict]:
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docs = []
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for p in sorted(METADATA_DIR.glob("*.json"), key=lambda x: x.stat().st_mtime, reverse=True):
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try:
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meta = json.loads(p.read_text())
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except Exception:
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continue
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if topic and topic not in meta.get("topics", []):
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continue
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docs.append(meta)
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return docs
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async def list_metadata(
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session: AsyncSession, topic: Optional[str] = None
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) -> list:
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"""Return a list of metadata dicts, optionally filtered by topic name."""
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stmt = select(Document).order_by(Document.created_at.desc())
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if topic is not None:
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stmt = (
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stmt.join(DocumentTopic, DocumentTopic.document_id == Document.id)
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.join(Topic, Topic.id == DocumentTopic.topic_id)
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.where(Topic.name == topic)
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)
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result = await session.execute(stmt)
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docs = result.scalars().all()
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rows = []
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for doc in docs:
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topic_names = await _load_topic_names(session, doc.id)
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rows.append(_doc_to_dict(doc, topic_names))
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return rows
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def delete_document(doc_id: str) -> bool:
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meta_path = METADATA_DIR / f"{doc_id}.json"
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if not meta_path.exists():
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async def delete_document(session: AsyncSession, doc_id: str) -> bool:
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"""Delete a document's MinIO object and its PostgreSQL row.
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Returns False if the document is not found; True on success.
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MinIO deletion failures are logged to stderr but do not prevent the DB row
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deletion (the bytes may already be gone).
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"""
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try:
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uid = uuid.UUID(doc_id)
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except ValueError:
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return False
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meta = json.loads(meta_path.read_text())
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upload_path = UPLOADS_DIR / meta.get("filename", "")
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if upload_path.exists():
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upload_path.unlink()
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meta_path.unlink()
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lock_path = Path(str(meta_path) + ".lock")
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if lock_path.exists():
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lock_path.unlink()
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doc = await session.get(Document, uid)
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if doc is None:
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return False
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try:
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await _backend().delete_object(doc.object_key)
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except Exception as exc:
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print(f"[storage] WARNING: MinIO delete_object failed for {doc.object_key!r}: {exc}", file=sys.stderr)
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await session.delete(doc)
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await session.commit()
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return True
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def update_document_topics(doc_id: str, topics: list[str]) -> dict | None:
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meta = get_metadata(doc_id)
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if meta is None:
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async def update_document_topics(
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session: AsyncSession, doc_id: str, topics: list
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) -> Optional[dict]:
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"""Replace all topic associations for a document.
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Auto-creates topics that don't yet exist. Returns the refreshed metadata
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dict, or None if the document is not found.
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"""
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try:
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uid = uuid.UUID(doc_id)
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except ValueError:
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return None
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meta["topics"] = topics
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meta["classified_at"] = datetime.now(timezone.utc).isoformat()
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save_metadata(meta)
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return meta
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doc = await session.get(Document, uid)
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if doc is None:
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return None
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def remove_topic_from_all_documents(topic_name: str) -> int:
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"""Remove a topic name from all documents. Returns number of docs updated."""
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count = 0
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for p in METADATA_DIR.glob("*.json"):
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try:
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meta = json.loads(p.read_text())
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except Exception:
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# Remove all existing associations
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await session.execute(
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delete(DocumentTopic).where(DocumentTopic.document_id == uid)
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)
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# Re-insert, deduplicating by name
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seen: set = set()
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for name in topics:
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if name in seen:
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continue
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if topic_name in meta.get("topics", []):
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meta["topics"] = [t for t in meta["topics"] if t != topic_name]
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lock = FileLock(str(p) + ".lock")
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with lock:
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p.write_text(json.dumps(meta, indent=2, ensure_ascii=False))
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count += 1
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return count
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seen.add(name)
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topic_dict = await create_topic(session, name)
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session.add(
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DocumentTopic(
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document_id=uid,
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topic_id=uuid.UUID(topic_dict["id"]),
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)
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)
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doc.status = "classified"
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await session.commit()
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return await get_metadata(session, doc_id)
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async def remove_topic_from_all_documents(
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session: AsyncSession, topic_name: str
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) -> int:
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"""Delete all DocumentTopic rows for the named topic.
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Returns the number of rows deleted.
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"""
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q = await session.execute(
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select(Topic).where(sql_func.lower(Topic.name) == topic_name.lower())
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)
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topic = q.scalars().first()
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if topic is None:
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return 0
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result = await session.execute(
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delete(DocumentTopic).where(DocumentTopic.topic_id == topic.id)
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)
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await session.commit()
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return result.rowcount
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# ── Topics ────────────────────────────────────────────────────────────────────
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def load_topics() -> list[dict]:
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with _topics_lock:
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data = json.loads(TOPICS_FILE.read_text())
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return data.get("topics", [])
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async def load_topics(session: AsyncSession) -> list:
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"""Return all topics ordered by name."""
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q = await session.execute(select(Topic).order_by(Topic.name))
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return [
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{"id": str(t.id), "name": t.name, "description": t.description, "color": t.color}
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for t in q.scalars()
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]
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def save_topics(topics: list[dict]) -> None:
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with _topics_lock:
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TOPICS_FILE.write_text(json.dumps({"topics": topics}, indent=2))
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async def save_topics(session: AsyncSession, topics: list) -> None:
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"""Idempotent bulk replace — delete all Topic rows then insert the list.
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def get_topic(topic_id: str) -> dict | None:
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return next((t for t in load_topics() if t["id"] == topic_id), None)
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def create_topic(name: str, description: str = "", color: str = "#6366f1") -> dict:
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topics = load_topics()
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# Deduplicate by name (case-insensitive)
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if any(t["name"].lower() == name.lower() for t in topics):
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return next(t for t in topics if t["name"].lower() == name.lower())
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topic = {
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"id": str(uuid.uuid4())[:8],
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"name": name,
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"description": description,
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"color": color,
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}
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topics.append(topic)
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save_topics(topics)
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return topic
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def update_topic(topic_id: str, **kwargs) -> dict | None:
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topics = load_topics()
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# legacy: not used by current endpoints; preserved for API compatibility.
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"""
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await session.execute(delete(Topic))
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for t in topics:
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if t["id"] == topic_id:
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t.update({k: v for k, v in kwargs.items() if v is not None})
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save_topics(topics)
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return t
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return None
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session.add(
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Topic(
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id=uuid.UUID(t["id"]) if t.get("id") else uuid.uuid4(),
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name=t["name"],
|
||||
description=t.get("description", ""),
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color=t.get("color", "#6366f1"),
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||||
)
|
||||
)
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await session.commit()
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|
||||
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def delete_topic(topic_id: str) -> str | None:
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topics = load_topics()
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topic = next((t for t in topics if t["id"] == topic_id), None)
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||||
if not topic:
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async def get_topic(session: AsyncSession, topic_id: str) -> Optional[dict]:
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"""Return a topic dict by UUID string, or None if not found."""
|
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try:
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uid = uuid.UUID(topic_id)
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||||
except ValueError:
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return None
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name = topic["name"]
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save_topics([t for t in topics if t["id"] != topic_id])
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remove_topic_from_all_documents(name)
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t = await session.get(Topic, uid)
|
||||
if t is None:
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return None
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||||
return {"id": str(t.id), "name": t.name, "description": t.description, "color": t.color}
|
||||
|
||||
|
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async def create_topic(
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session: AsyncSession,
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name: str,
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||||
description: str = "",
|
||||
color: str = "#6366f1",
|
||||
) -> dict:
|
||||
"""Create a topic, or return the existing one (case-insensitive deduplication)."""
|
||||
q = await session.execute(
|
||||
select(Topic).where(sql_func.lower(Topic.name) == name.lower())
|
||||
)
|
||||
existing = q.scalars().first()
|
||||
if existing is not None:
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||||
return {
|
||||
"id": str(existing.id),
|
||||
"name": existing.name,
|
||||
"description": existing.description,
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||||
"color": existing.color,
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||||
}
|
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|
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topic = Topic(name=name, description=description, color=color)
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session.add(topic)
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await session.commit()
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||||
return {
|
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"id": str(topic.id),
|
||||
"name": topic.name,
|
||||
"description": topic.description,
|
||||
"color": topic.color,
|
||||
}
|
||||
|
||||
|
||||
async def update_topic(
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||||
session: AsyncSession,
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||||
topic_id: str,
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||||
name: Optional[str] = None,
|
||||
description: Optional[str] = None,
|
||||
color: Optional[str] = None,
|
||||
) -> Optional[dict]:
|
||||
"""Update non-None fields on a topic. Returns updated dict or None."""
|
||||
try:
|
||||
uid = uuid.UUID(topic_id)
|
||||
except ValueError:
|
||||
return None
|
||||
t = await session.get(Topic, uid)
|
||||
if t is None:
|
||||
return None
|
||||
if name is not None:
|
||||
t.name = name
|
||||
if description is not None:
|
||||
t.description = description
|
||||
if color is not None:
|
||||
t.color = color
|
||||
await session.commit()
|
||||
return {"id": str(t.id), "name": t.name, "description": t.description, "color": t.color}
|
||||
|
||||
|
||||
async def delete_topic(session: AsyncSession, topic_id: str) -> Optional[str]:
|
||||
"""Delete a topic and cascade-remove its DocumentTopic rows.
|
||||
|
||||
Returns the deleted topic name, or None if not found.
|
||||
"""
|
||||
try:
|
||||
uid = uuid.UUID(topic_id)
|
||||
except ValueError:
|
||||
return None
|
||||
t = await session.get(Topic, uid)
|
||||
if t is None:
|
||||
return None
|
||||
name = t.name
|
||||
await session.delete(t) # ondelete="CASCADE" removes DocumentTopic rows
|
||||
await session.commit()
|
||||
return name
|
||||
|
||||
|
||||
def topic_doc_counts() -> dict[str, int]:
|
||||
counts: dict[str, int] = {}
|
||||
for p in METADATA_DIR.glob("*.json"):
|
||||
try:
|
||||
meta = json.loads(p.read_text())
|
||||
except Exception:
|
||||
continue
|
||||
for t in meta.get("topics", []):
|
||||
counts[t] = counts.get(t, 0) + 1
|
||||
return counts
|
||||
async def topic_doc_counts(session: AsyncSession) -> dict:
|
||||
"""Return a mapping of topic name -> document count."""
|
||||
q = await session.execute(
|
||||
select(Topic.name, sql_func.count(DocumentTopic.document_id))
|
||||
.join(DocumentTopic, DocumentTopic.topic_id == Topic.id, isouter=True)
|
||||
.group_by(Topic.name)
|
||||
)
|
||||
return {name: count for name, count in q}
|
||||
|
||||
|
||||
# ── Settings ──────────────────────────────────────────────────────────────────
|
||||
# Phase 2 will move per-user settings to users.ai_provider / users.ai_model
|
||||
# (D-03 deferred to user-scoped column population).
|
||||
# For now these remain as flat-file JSON — single-writer, no filelock needed.
|
||||
|
||||
def load_settings() -> dict:
|
||||
with _settings_lock:
|
||||
"""Read app settings from the flat-file SETTINGS_FILE.
|
||||
|
||||
Falls back to DEFAULT_SETTINGS if the file is missing.
|
||||
# Phase 2 will move per-user settings to users.ai_provider / users.ai_model.
|
||||
"""
|
||||
try:
|
||||
return json.loads(SETTINGS_FILE.read_text())
|
||||
except (FileNotFoundError, json.JSONDecodeError):
|
||||
return copy.deepcopy(DEFAULT_SETTINGS)
|
||||
|
||||
|
||||
def save_settings(settings: dict) -> None:
|
||||
with _settings_lock:
|
||||
SETTINGS_FILE.write_text(json.dumps(settings, indent=2))
|
||||
"""Write app settings to the flat-file SETTINGS_FILE.
|
||||
|
||||
No filelock — Phase 1 settings file is single-writer.
|
||||
# Phase 2 will move per-user settings to users.ai_provider / users.ai_model.
|
||||
"""
|
||||
SETTINGS_FILE.write_text(json.dumps(settings, indent=2))
|
||||
|
||||
|
||||
def mask_api_key(key: str) -> str:
|
||||
@@ -178,10 +441,33 @@ def mask_api_key(key: str) -> str:
|
||||
|
||||
|
||||
def settings_masked(settings: dict) -> dict:
|
||||
import copy
|
||||
s = copy.deepcopy(settings)
|
||||
for prov in ("anthropic", "openai"):
|
||||
key = s.get("providers", {}).get(prov, {}).get("api_key", "")
|
||||
if key:
|
||||
s["providers"][prov]["api_key"] = mask_api_key(key)
|
||||
return s
|
||||
|
||||
|
||||
# ── Public surface ─────────────────────────────────────────────────────────────
|
||||
|
||||
__all__ = [
|
||||
"save_upload",
|
||||
"save_metadata",
|
||||
"get_metadata",
|
||||
"list_metadata",
|
||||
"delete_document",
|
||||
"update_document_topics",
|
||||
"remove_topic_from_all_documents",
|
||||
"load_topics",
|
||||
"save_topics",
|
||||
"get_topic",
|
||||
"create_topic",
|
||||
"update_topic",
|
||||
"delete_topic",
|
||||
"topic_doc_counts",
|
||||
"load_settings",
|
||||
"save_settings",
|
||||
"mask_api_key",
|
||||
"settings_masked",
|
||||
]
|
||||
|
||||
Reference in New Issue
Block a user